SNP Report
Basic Infomation
| Name | rs760077 dbSNP |
|---|---|
| Location | chr:1,155178782 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264337 | 0.80[ASN][1000 genomes] |
| rs11264338 | 0.80[ASN][1000 genomes] |
| rs11264339 | 0.82[ASN][1000 genomes] |
| rs12411216 | 0.90[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12752585 | 0.80[ASN][1000 genomes] |
| rs2066981 | 0.94[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2974937 | 0.94[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs370545 | 0.92[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4072037 | 0.86[ASN][1000 genomes] |
| rs4276914 | 0.82[ASN][1000 genomes] |
| rs4421576 | 0.82[ASN][1000 genomes] |
| rs4460629 | 0.80[ASN][1000 genomes] |
| rs4971085 | 0.80[ASN][1000 genomes] |
| rs4971088 | 0.84[ASN][1000 genomes] |
| rs4971089 | 0.82[ASN][1000 genomes] |
| rs6676150 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7556304 | 0.80[ASN][1000 genomes] |
| rs914615 | 0.94[AFR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| THBS3 | Proximal transcriptional regulation |
| MTX1 | Proximal transcriptional regulation |
| ATG10 | Distal transcriptional regulation |
| NPM1 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| MTX1P1 | Distal transcriptional regulation |
| RUSC1 | Distal transcriptional regulation |
| RUSC1-AS1 | Distal transcriptional regulation |
| CLK2 | Distal transcriptional regulation |
| GBA | Distal transcriptional regulation |
| FAM189B | Distal transcriptional regulation |
| SCAMP3 | Distal transcriptional regulation |
| MTX1 | Distal transcriptional regulation |
| EFNA3 | Distal transcriptional regulation |
| SLC50A1 | Distal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| FDPS | Distal transcriptional regulation |
| THBS3 | RNA binding protein mediated regulation |
| MTX1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014