SNP Report
Basic Infomation
| Name | rs2974937 dbSNP |
|---|---|
| Location | chr:1,155168849 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264337 | 0.83[ASN][1000 genomes] |
| rs11264338 | 0.83[ASN][1000 genomes] |
| rs11264339 | 0.85[ASN][1000 genomes] |
| rs12411216 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12752585 | 0.83[ASN][1000 genomes] |
| rs2066981 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2070803 | 0.81[ASN][1000 genomes] |
| rs2075571 | 0.82[ASN][1000 genomes] |
| rs370545 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4072037 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs423144 | 0.83[ASN][1000 genomes] |
| rs4276914 | 0.85[ASN][1000 genomes] |
| rs4421576 | 0.85[ASN][1000 genomes] |
| rs4460629 | 0.83[ASN][1000 genomes] |
| rs4971085 | 0.83[ASN][1000 genomes] |
| rs4971088 | 0.87[ASN][1000 genomes] |
| rs4971089 | 0.85[ASN][1000 genomes] |
| rs4971100 | 0.81[ASN][1000 genomes] |
| rs4971101 | 0.81[ASN][1000 genomes] |
| rs7366775 | 0.82[ASN][1000 genomes] |
| rs7556304 | 0.83[ASN][1000 genomes] |
| rs760077 | 0.94[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs914615 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9426886 | 0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| THBS3 | Proximal transcriptional regulation |
| ENSG00000231064 | Proximal transcriptional regulation |
| CLK2 | Distal transcriptional regulation |
| ENSG00000231064 | RNA binding protein mediated regulation |
| THBS3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014