SNP Report
Basic Infomation
| Name | rs4971100 dbSNP |
|---|---|
| Location | chr:1,155155731 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264337 | 0.82[CHD][hapmap];0.82[JPT][hapmap] |
| rs11264338 | 0.84[CHD][hapmap];0.82[JPT][hapmap] |
| rs11264339 | 0.82[CHD][hapmap];0.91[JPT][hapmap] |
| rs11264341 | 0.96[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.90[TSI][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12028043 | 0.82[CHD][hapmap] |
| rs12411216 | 0.81[ASN][1000 genomes] |
| rs2066981 | 0.81[JPT][hapmap] |
| rs2070803 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2075571 | 0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2974937 | 0.81[ASN][1000 genomes] |
| rs3814316 | 0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs4072037 | 0.86[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap] |
| rs423144 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4421576 | 0.82[CHD][hapmap];0.91[JPT][hapmap] |
| rs4460629 | 0.82[CHD][hapmap] |
| rs4971059 | 0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4971066 | 0.93[CHB][hapmap];0.87[CHD][hapmap] |
| rs4971073 | 0.93[CHB][hapmap];0.94[CHD][hapmap] |
| rs4971079 | 0.81[CHD][hapmap] |
| rs4971085 | 0.82[JPT][hapmap] |
| rs4971088 | 0.91[JPT][hapmap] |
| rs4971093 | 0.90[ASN][1000 genomes] |
| rs4971099 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4971101 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7366775 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7556304 | 0.82[CHD][hapmap];0.82[JPT][hapmap] |
| rs914615 | 0.91[JPT][hapmap] |
| rs9426886 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ADAM15 | Distal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| KRTCAP2 | RNA binding protein mediated regulation |
| TRIM46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014