SNP Report
Basic Infomation
| Name | rs423144 dbSNP |
|---|---|
| Location | chr:1,155169355 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264341 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12411216 | 0.83[ASN][1000 genomes] |
| rs2070803 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2075571 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2974937 | 0.83[ASN][1000 genomes] |
| rs3814316 | 0.86[ASN][1000 genomes] |
| rs4971059 | 0.84[ASN][1000 genomes] |
| rs4971093 | 0.86[ASN][1000 genomes] |
| rs4971099 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4971100 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4971101 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7366775 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9426886 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| THBS3 | Proximal transcriptional regulation |
| ENSG00000231064 | Proximal transcriptional regulation |
| CLK2 | Distal transcriptional regulation |
| ENSG00000231064 | RNA binding protein mediated regulation |
| THBS3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014