SNP Report
Basic Infomation
| Name | rs11264341 dbSNP |
|---|---|
| Location | chr:1,155151493 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2070803 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2075571 | 0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3814316 | 0.87[ASW][hapmap];0.83[CHD][hapmap];0.88[LWK][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs423144 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4971059 | 0.81[CHD][hapmap] |
| rs4971099 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4971100 | 0.96[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.90[TSI][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4971101 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7366775 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9426886 | 1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DPM3 | Distal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| SLC50A1 | Distal transcriptional regulation |
| ENSG00000250784 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| KRTCAP2 | RNA binding protein mediated regulation |
| TRIM46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014