SNP Report

Basic Infomation

Name	rs2075571 dbSNP
Location	chr:1,155174106
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11264337	0.82[JPT][hapmap]
rs11264338	0.82[JPT][hapmap]
rs11264339	0.91[JPT][hapmap]
rs11264341	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12411216	0.82[ASN][1000 genomes]
rs2066981	0.84[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2070803	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2974937	0.82[ASN][1000 genomes]
rs370545	0.84[ASN][1000 genomes]
rs3814316	0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4072037	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs423144	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4421576	0.91[JPT][hapmap]
rs4971059	0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4971066	0.93[CHB][hapmap];0.80[CHD][hapmap]
rs4971073	0.93[CHB][hapmap];0.86[CHD][hapmap]
rs4971085	0.82[JPT][hapmap]
rs4971088	0.91[JPT][hapmap]
rs4971093	0.85[ASN][1000 genomes]
rs4971099	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4971100	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4971101	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7366775	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7556304	0.82[JPT][hapmap]
rs914615	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9426886	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
THBS3	Proximal transcriptional regulation
MTX1	Proximal transcriptional regulation
GBAP1	Distal transcriptional regulation
SCAMP3	Distal transcriptional regulation
ENSG00000231064	RNA binding protein mediated regulation
THBS3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)