SNP Report
Basic Infomation
| Name | rs12137164 dbSNP |
|---|---|
| Location | chr:1,155095977 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796939 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10908456 | 0.81[EUR][1000 genomes] |
| rs11264321 | 0.82[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11264322 | 0.82[EUR][1000 genomes] |
| rs11264323 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11264327 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11264333 | 0.81[EUR][1000 genomes] |
| rs11807418 | 0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12145362 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12904 | 0.81[EUR][1000 genomes] |
| rs4303067 | 0.81[EUR][1000 genomes] |
| rs7366138 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9297 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EFNA1 | Proximal transcriptional regulation |
| EFNA1 | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| KRTCAP2 | Distal transcriptional regulation |
| TRIM46 | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| ADAM15 | Distal transcriptional regulation |
| EFNA4 | Distal transcriptional regulation |
| ENSG00000251246 | Distal transcriptional regulation |
| EFNA3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014