SNP Report
Basic Infomation
| Name | rs11264333 dbSNP |
|---|---|
| Location | chr:1,155108287 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10157801 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10908458 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11264327 | 0.83[EUR][1000 genomes] |
| rs11264334 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11264335 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11807418 | 0.80[EUR][1000 genomes] |
| rs12028043 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12124306 | 0.85[EUR][1000 genomes] |
| rs12127609 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12129003 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12137164 | 0.81[EUR][1000 genomes] |
| rs12145362 | 0.83[EUR][1000 genomes] |
| rs12904 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34257409 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4246529 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4276913 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4390169 | 1.00[ASN][1000 genomes] |
| rs4745 | 1.00[ASN][1000 genomes] |
| rs4971052 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4971054 | 0.83[EUR][1000 genomes] |
| rs4971059 | 0.81[AMR][1000 genomes] |
| rs4971066 | 0.85[ASN][1000 genomes] |
| rs4971073 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4971076 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4971077 | 0.94[ASN][1000 genomes] |
| rs4971078 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4971079 | 0.94[ASN][1000 genomes] |
| rs4971093 | 0.84[AMR][1000 genomes] |
| rs6676150 | 0.89[ASN][1000 genomes] |
| rs7364524 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7366138 | 0.82[EUR][1000 genomes] |
| rs7535292 | 0.94[ASN][1000 genomes] |
| rs9297 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC50A1 | Proximal transcriptional regulation |
| ENSG00000250784 | Proximal transcriptional regulation |
| CHTF8 | Distal transcriptional regulation |
| CIRH1A | Distal transcriptional regulation |
| ENSG00000188825 | Distal transcriptional regulation |
| ENSG00000265692 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| ENSG00000222724 | Distal transcriptional regulation |
| TRPC4AP | Distal transcriptional regulation |
| EFHB | Distal transcriptional regulation |
| RAB5A | Distal transcriptional regulation |
| ENSG00000242622 | Distal transcriptional regulation |
| HSP90AB1 | Distal transcriptional regulation |
| ZKSCAN5 | Distal transcriptional regulation |
| LSM5 | Distal transcriptional regulation |
| AVL9 | Distal transcriptional regulation |
| URGCP | Distal transcriptional regulation |
| UBE2D4 | Distal transcriptional regulation |
| RPL12 | Distal transcriptional regulation |
| LRSAM1 | Distal transcriptional regulation |
| SNORA70 | Distal transcriptional regulation |
| RCC1 | Distal transcriptional regulation |
| NFYC | Distal transcriptional regulation |
| ELOVL1 | Distal transcriptional regulation |
| STRIP1 | Distal transcriptional regulation |
| EFNA3 | Distal transcriptional regulation |
| MUC1 | Distal transcriptional regulation |
| DPM3 | Distal transcriptional regulation |
| KRTCAP2 | Distal transcriptional regulation |
| TRIM46 | Distal transcriptional regulation |
| ENSG00000231064 | Distal transcriptional regulation |
| THBS3 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| CIRBP | Distal transcriptional regulation |
| PLEKHO1 | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| ADAM15 | Distal transcriptional regulation |
| EFNA4 | Distal transcriptional regulation |
| ENSG00000251246 | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| FAM189B | Distal transcriptional regulation |
| SLC50A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014