SNP Report
Basic Infomation
| Name | rs4390169 dbSNP |
|---|---|
| Location | chr:1,155106054 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10157801 | 0.94[ASN][1000 genomes] |
| rs10908458 | 0.94[ASN][1000 genomes] |
| rs11264328 | 0.87[EUR][1000 genomes] |
| rs11264329 | 0.87[EUR][1000 genomes] |
| rs11264333 | 1.00[ASN][1000 genomes] |
| rs11264334 | 0.90[ASN][1000 genomes] |
| rs11264335 | 0.90[ASN][1000 genomes] |
| rs12028043 | 0.94[ASN][1000 genomes] |
| rs12040970 | 0.87[EUR][1000 genomes] |
| rs12127609 | 0.94[ASN][1000 genomes] |
| rs12129003 | 0.85[ASN][1000 genomes] |
| rs12904 | 1.00[ASN][1000 genomes] |
| rs34257409 | 0.89[ASN][1000 genomes] |
| rs34815285 | 0.82[EUR][1000 genomes] |
| rs4246529 | 1.00[ASN][1000 genomes] |
| rs4276913 | 0.94[ASN][1000 genomes] |
| rs4745 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4971052 | 0.94[ASN][1000 genomes] |
| rs4971066 | 0.85[ASN][1000 genomes] |
| rs4971073 | 0.85[ASN][1000 genomes] |
| rs4971076 | 0.94[ASN][1000 genomes] |
| rs4971077 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4971078 | 0.94[ASN][1000 genomes] |
| rs4971079 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6676150 | 0.89[ASN][1000 genomes] |
| rs7364524 | 0.94[ASN][1000 genomes] |
| rs7535292 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9297 | 1.00[ASN][1000 genomes] |
| rs9330263 | 0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC50A1 | Proximal transcriptional regulation |
| ENSG00000250784 | Proximal transcriptional regulation |
| MUC1 | Distal transcriptional regulation |
| MIR92B | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| CKS1B | Distal transcriptional regulation |
| MIR4258 | Distal transcriptional regulation |
| KRTCAP2 | Distal transcriptional regulation |
| TRIM46 | Distal transcriptional regulation |
| EFNA3 | Distal transcriptional regulation |
| EFNA1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014