SNP Report
Basic Infomation
| Name | rs10796939 dbSNP |
|---|---|
| Location | chr:1,155088795 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796938 | 0.90[ASN][1000 genomes] |
| rs10908454 | 0.90[ASN][1000 genomes] |
| rs10908455 | 0.90[ASN][1000 genomes] |
| rs10908456 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11264312 | 0.90[ASN][1000 genomes] |
| rs11264313 | 0.87[ASN][1000 genomes] |
| rs11264314 | 0.90[ASN][1000 genomes] |
| rs11264319 | 0.90[ASN][1000 genomes] |
| rs11264321 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11264322 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11264323 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11264327 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11264328 | 0.93[ASN][1000 genomes] |
| rs11264329 | 0.93[ASN][1000 genomes] |
| rs11807418 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12026113 | 0.93[ASN][1000 genomes] |
| rs12039316 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12040970 | 0.93[ASN][1000 genomes] |
| rs12137164 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12145362 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1462855 | 0.90[ASN][1000 genomes] |
| rs1870939 | 0.90[ASN][1000 genomes] |
| rs2306124 | 0.90[ASN][1000 genomes] |
| rs3766918 | 0.90[ASN][1000 genomes] |
| rs4303067 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4361977 | 0.84[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4625273 | 0.90[ASN][1000 genomes] |
| rs4845408 | 0.93[ASN][1000 genomes] |
| rs4845708 | 0.90[ASN][1000 genomes] |
| rs56112907 | 0.90[ASN][1000 genomes] |
| rs6427158 | 0.90[ASN][1000 genomes] |
| rs6665822 | 0.93[ASN][1000 genomes] |
| rs6693477 | 0.90[ASN][1000 genomes] |
| rs7364869 | 0.90[ASN][1000 genomes] |
| rs7365544 | 0.90[ASN][1000 genomes] |
| rs7366138 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7366355 | 0.90[ASN][1000 genomes] |
| rs7367207 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7367758 | 0.93[ASN][1000 genomes] |
| rs7367897 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7368345 | 0.90[ASN][1000 genomes] |
| rs7534162 | 0.90[ASN][1000 genomes] |
| rs7548955 | 0.90[ASN][1000 genomes] |
| rs9330263 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000202027 | Proximal transcriptional regulation |
| EFNA3 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014