SNP Report
Basic Infomation
| Name | rs4045192 dbSNP |
|---|---|
| Location | chr:1,155038756 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1001848 | 0.85[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes] |
| rs10908454 | 0.85[JPT][hapmap] |
| rs10908455 | 0.85[JPT][hapmap] |
| rs10908456 | 0.85[JPT][hapmap] |
| rs11264304 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs11264306 | 0.85[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes] |
| rs11264307 | 0.86[ASN][1000 genomes] |
| rs11264314 | 0.82[JPT][hapmap] |
| rs11264319 | 0.85[JPT][hapmap] |
| rs11264329 | 0.85[JPT][hapmap] |
| rs12040970 | 0.85[JPT][hapmap] |
| rs12047986 | 0.86[ASN][1000 genomes] |
| rs12145362 | 0.85[JPT][hapmap] |
| rs1462855 | 0.85[JPT][hapmap] |
| rs1564124 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1870939 | 0.85[JPT][hapmap] |
| rs2306124 | 0.85[JPT][hapmap] |
| rs2306125 | 0.86[JPT][hapmap] |
| rs35902694 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs3765087 | 0.85[JPT][hapmap] |
| rs3766916 | 0.85[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs3806256 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4845407 | 0.85[JPT][hapmap] |
| rs4845408 | 0.85[JPT][hapmap] |
| rs4845712 | 0.86[ASN][1000 genomes] |
| rs6427158 | 0.85[JPT][hapmap] |
| rs6665822 | 0.85[JPT][hapmap] |
| rs6693477 | 0.85[JPT][hapmap] |
| rs7365544 | 0.85[JPT][hapmap] |
| rs7367207 | 0.85[JPT][hapmap] |
| rs7367897 | 1.00[JPT][hapmap] |
| rs7368345 | 0.85[JPT][hapmap] |
| rs7534162 | 0.85[JPT][hapmap] |
| rs7548955 | 0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMVK | Distal transcriptional regulation |
| ZBTB7B | Distal transcriptional regulation |
| EFNA4 | RNA binding protein mediated regulation |
| EFNA3 | RNA binding protein mediated regulation |
| ENSG00000251246 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014