SNP Report

Basic Infomation

Name	rs30379 dbSNP
Location	chr:5,96122260
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 66)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs149189	0.97[ASN][1000 genomes]
rs151823	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs151940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs151964	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs152280	0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs152468	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs168674	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs173491	0.82[JPT][hapmap]
rs184971	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs187387	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs190298	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs246453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs246454	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs246455	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs246456	0.90[AMR][1000 genomes]
rs2549805	0.87[CHB][hapmap]
rs26489	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs26490	0.93[ASN][1000 genomes]
rs26491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs26493	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs26495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[ASN][1000 genomes]
rs26496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs26497	0.97[ASN][1000 genomes]
rs26498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[ASN][1000 genomes]
rs26499	0.85[JPT][hapmap];0.92[YRI][hapmap]
rs26500	0.97[ASN][1000 genomes]
rs26510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs26512	0.96[ASN][1000 genomes]
rs26653	0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs26654	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs26655	0.86[ASN][1000 genomes]
rs27043	0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs27044	0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs27045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs27432	0.87[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs27434	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[ASN][1000 genomes]
rs27527	0.81[ASN][1000 genomes]
rs27529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27640	0.97[ASN][1000 genomes]
rs27645	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs27694	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs27710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs28333	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28337	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs30185	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs30186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs30187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs30334	0.84[ASN][1000 genomes]
rs30376	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs30378	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs30380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34735	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs34750	0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs34751	0.85[ASN][1000 genomes]
rs34752	0.84[ASN][1000 genomes]
rs39840	0.86[ASN][1000 genomes]
rs39841	0.85[ASN][1000 genomes]
rs42398	0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs467735	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs469367	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs469735	0.95[ASN][1000 genomes]
rs469758	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs469783	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs695965	0.86[ASN][1000 genomes]
rs845028	0.86[CHB][hapmap];0.86[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ERAP1	Distal transcriptional regulation
ERAP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)