SNP Report

Basic Infomation

Name	rs152280 dbSNP
Location	chr:5,96161942
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 68)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs149189	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs149431	0.88[ASN][1000 genomes]
rs149544	0.88[ASN][1000 genomes]
rs151908	0.87[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.88[ASN][1000 genomes]
rs151909	0.88[ASN][1000 genomes]
rs151910	0.88[ASN][1000 genomes]
rs151911	0.89[CHB][hapmap];0.90[YRI][hapmap];0.88[ASN][1000 genomes]
rs151940	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs151953	0.87[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.88[ASN][1000 genomes]
rs151954	0.88[ASN][1000 genomes]
rs151964	0.84[ASN][1000 genomes]
rs152466	0.97[ASN][1000 genomes]
rs152468	0.81[CHD][hapmap]
rs187387	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs190298	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs193482	0.88[ASN][1000 genomes]
rs246453	0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs246454	0.82[ASN][1000 genomes]
rs246455	0.82[ASN][1000 genomes]
rs26489	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs26490	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs26491	0.87[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs26493	0.81[CHD][hapmap]
rs26495	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs26496	0.87[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs26497	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs26498	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs26500	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs26510	0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs26512	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs27045	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs27434	0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs27527	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs27529	0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs27640	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs27645	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs27710	0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs28119	0.85[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28129	0.87[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.93[YRI][hapmap];0.88[ASN][1000 genomes]
rs28333	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28337	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs30185	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs30186	0.87[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs30187	0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs30378	0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs30379	0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs30380	0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs34737	0.97[ASN][1000 genomes]
rs34753	0.87[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs34755	0.83[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs34756	0.87[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs34757	0.88[ASN][1000 genomes]
rs34759	0.88[ASN][1000 genomes]
rs34760	0.88[ASN][1000 genomes]
rs34761	0.86[YRI][hapmap]
rs34762	0.88[ASN][1000 genomes]
rs34764	0.87[ASN][1000 genomes]
rs35134	0.87[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs40090	0.84[ASN][1000 genomes]
rs40091	0.88[ASN][1000 genomes]
rs40604	0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.88[ASN][1000 genomes]
rs42443	0.88[ASN][1000 genomes]
rs467735	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs468130	0.87[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.88[ASN][1000 genomes]
rs469735	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs469758	0.83[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs469783	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs845028	0.81[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
ERAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
ERAP2	seeQTL
CAST	SCAN
ERAP2	SCAN
FAM174A	SCAN
CAST	SCAN
ERAP2	SCAN
LNPEP	SCAN