SNP Report
Basic Infomation
| Name | rs246455 dbSNP |
|---|---|
| Location | chr:5,96123210 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 53)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs149189 | 0.97[ASN][1000 genomes] |
| rs151940 | 0.95[ASN][1000 genomes] |
| rs151964 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs152280 | 0.82[ASN][1000 genomes] |
| rs168674 | 0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs246453 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs246454 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs246456 | 0.90[AMR][1000 genomes] |
| rs26489 | 0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs26490 | 0.93[ASN][1000 genomes] |
| rs26491 | 0.97[ASN][1000 genomes] |
| rs26495 | 0.97[ASN][1000 genomes] |
| rs26496 | 0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs26497 | 0.97[ASN][1000 genomes] |
| rs26498 | 0.97[ASN][1000 genomes] |
| rs26500 | 0.97[ASN][1000 genomes] |
| rs26510 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs26512 | 0.96[ASN][1000 genomes] |
| rs26653 | 0.86[ASN][1000 genomes] |
| rs26654 | 0.86[ASN][1000 genomes] |
| rs26655 | 0.86[ASN][1000 genomes] |
| rs27043 | 0.86[ASN][1000 genomes] |
| rs27044 | 0.86[ASN][1000 genomes] |
| rs27045 | 0.83[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs27432 | 0.87[ASN][1000 genomes] |
| rs27434 | 0.97[ASN][1000 genomes] |
| rs27527 | 0.81[ASN][1000 genomes] |
| rs27529 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs27640 | 0.97[ASN][1000 genomes] |
| rs27710 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28119 | 0.97[ASN][1000 genomes] |
| rs28333 | 0.81[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28337 | 0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs30185 | 0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs30186 | 0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs30187 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs30334 | 0.84[ASN][1000 genomes] |
| rs30376 | 0.86[ASN][1000 genomes] |
| rs30378 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs30379 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs30380 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34750 | 0.85[ASN][1000 genomes] |
| rs34751 | 0.85[ASN][1000 genomes] |
| rs34752 | 0.84[ASN][1000 genomes] |
| rs39840 | 0.86[ASN][1000 genomes] |
| rs39841 | 0.85[ASN][1000 genomes] |
| rs42398 | 0.86[ASN][1000 genomes] |
| rs467735 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs469367 | 0.85[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs469735 | 0.95[ASN][1000 genomes] |
| rs469758 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs469783 | 0.98[ASN][1000 genomes] |
| rs695965 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP1 | Proximal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| LNPEP | Distal transcriptional regulation |
| ENSG00000247121 | Distal transcriptional regulation |
| ERAP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014