SNP Report
Basic Infomation
| Name | rs246453 dbSNP |
|---|---|
| Location | chr:5,96123336 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 66)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs149189 | 0.97[ASN][1000 genomes] |
| rs151823 | 0.87[CHB][hapmap];0.91[JPT][hapmap] |
| rs151940 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs151964 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs152280 | 0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs152468 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs168674 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs173491 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
| rs184971 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
| rs187387 | 0.84[CHB][hapmap];0.83[JPT][hapmap] |
| rs190298 | 0.84[CHB][hapmap];0.83[JPT][hapmap] |
| rs246454 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs246455 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs246456 | 0.90[AMR][1000 genomes] |
| rs2549805 | 0.87[CHB][hapmap] |
| rs26489 | 0.87[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs26490 | 0.93[ASN][1000 genomes] |
| rs26491 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs26493 | 0.87[CHB][hapmap];0.91[JPT][hapmap] |
| rs26495 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[ASN][1000 genomes] |
| rs26496 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs26497 | 0.97[ASN][1000 genomes] |
| rs26498 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[ASN][1000 genomes] |
| rs26499 | 0.85[JPT][hapmap];0.88[YRI][hapmap] |
| rs26500 | 0.97[ASN][1000 genomes] |
| rs26510 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs26512 | 0.96[ASN][1000 genomes] |
| rs26653 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs26654 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs26655 | 0.86[ASN][1000 genomes] |
| rs27043 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs27044 | 0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs27045 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs27432 | 0.87[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs27434 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[ASN][1000 genomes] |
| rs27527 | 0.81[ASN][1000 genomes] |
| rs27529 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs27640 | 0.97[ASN][1000 genomes] |
| rs27645 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs27694 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs27710 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28119 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs28333 | 0.83[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28337 | 0.87[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs30185 | 0.87[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs30186 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs30187 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs30334 | 0.84[ASN][1000 genomes] |
| rs30376 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs30378 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs30379 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs30380 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34735 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs34750 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs34751 | 0.85[ASN][1000 genomes] |
| rs34752 | 0.84[ASN][1000 genomes] |
| rs39840 | 0.86[ASN][1000 genomes] |
| rs39841 | 0.85[ASN][1000 genomes] |
| rs42398 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs467735 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs469367 | 0.87[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs469735 | 0.95[ASN][1000 genomes] |
| rs469758 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs469783 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs695965 | 0.86[ASN][1000 genomes] |
| rs845028 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP1 | Proximal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| LNPEP | Distal transcriptional regulation |
| ENSG00000247121 | Distal transcriptional regulation |
| ERAP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014