SNP Report
Basic Infomation
| Name | rs168674 dbSNP |
|---|---|
| Location | chr:5,96123125 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs151964 | 0.83[AMR][1000 genomes] |
| rs246453 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs246454 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs246455 | 0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs246456 | 0.81[AMR][1000 genomes] |
| rs26510 | 0.84[AMR][1000 genomes] |
| rs27529 | 0.84[AMR][1000 genomes] |
| rs27710 | 0.84[AMR][1000 genomes] |
| rs30187 | 0.84[AMR][1000 genomes] |
| rs30378 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs30379 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs30380 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs467735 | 0.80[ASN][1000 genomes] |
| rs469367 | 0.82[ASN][1000 genomes] |
| rs469758 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP1 | Proximal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| LNPEP | Distal transcriptional regulation |
| ENSG00000247121 | Distal transcriptional regulation |
| ERAP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014