SNP Report
Basic Infomation
| Name | rs173491 dbSNP |
|---|---|
| Location | chr:5,96122814 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs151940 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
| rs246453 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
| rs26495 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
| rs26496 | 0.83[JPT][hapmap] |
| rs26498 | 0.81[JPT][hapmap] |
| rs26499 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs26510 | 0.81[JPT][hapmap] |
| rs27045 | 0.81[JPT][hapmap] |
| rs27434 | 0.81[JPT][hapmap] |
| rs27529 | 0.81[JPT][hapmap] |
| rs27619 | 0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs27710 | 0.81[JPT][hapmap] |
| rs28119 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
| rs30186 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
| rs30187 | 0.81[JPT][hapmap] |
| rs30379 | 0.82[JPT][hapmap] |
| rs469758 | 0.81[JPT][hapmap] |
| rs469783 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP1 | Proximal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| ERAP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014