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rVarBase
SNP Report
Basic Infomation
Name
rs27619  
dbSNP
Location
chr:5,96118065
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs151823
0.83[JPT][hapmap]
rs173491
0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs26493
0.83[JPT][hapmap]
rs26499
0.83[CHB][hapmap];0.90[JPT][hapmap]
rs27042
0.84[CEU][hapmap];0.96[YRI][hapmap]
rs27043
0.83[JPT][hapmap]
rs27044
0.83[JPT][hapmap]
rs27432
0.84[JPT][hapmap]
rs30376
0.83[JPT][hapmap]
rs42398
0.83[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
ERAP1
Proximal transcriptional regulation
ENSG00000248734
Proximal transcriptional regulation
CAST
Distal transcriptional regulation
ENSG00000249180
Distal transcriptional regulation
ENSG00000248734
Distal transcriptional regulation
ERAP1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)