SNP Report
Name | rs26499   dbSNP |
---|---|
Location | chr:5,96132343 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs151823 | 0.80[JPT][hapmap] |
rs151940 | 0.86[JPT][hapmap] |
rs152468 | 0.80[JPT][hapmap] |
rs173491 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs246453 | 0.85[JPT][hapmap];0.88[YRI][hapmap] |
rs26489 | 0.83[AFR][1000 genomes] |
rs26491 | 0.84[JPT][hapmap] |
rs26493 | 0.80[JPT][hapmap] |
rs26495 | 0.86[JPT][hapmap] |
rs26496 | 0.86[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes] |
rs26498 | 0.85[JPT][hapmap];0.83[YRI][hapmap] |
rs26510 | 0.85[JPT][hapmap];0.92[YRI][hapmap] |
rs27043 | 0.80[JPT][hapmap] |
rs27045 | 0.85[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes] |
rs27434 | 0.84[JPT][hapmap];0.83[YRI][hapmap] |
rs27529 | 0.85[JPT][hapmap];0.92[YRI][hapmap] |
rs27619 | 0.83[CHB][hapmap];0.90[JPT][hapmap] |
rs27710 | 0.85[JPT][hapmap];0.92[YRI][hapmap] |
rs28119 | 0.86[JPT][hapmap] |
rs28337 | 0.83[AFR][1000 genomes] |
rs30185 | 0.81[AFR][1000 genomes] |
rs30186 | 0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes] |
rs30187 | 0.85[JPT][hapmap];0.92[YRI][hapmap] |
rs30378 | 0.83[JPT][hapmap] |
rs30379 | 0.85[JPT][hapmap];0.92[YRI][hapmap] |
rs30380 | 0.91[YRI][hapmap] |
rs42398 | 0.80[JPT][hapmap] |
rs469758 | 0.85[JPT][hapmap];0.92[YRI][hapmap] |
rs469783 | 0.85[JPT][hapmap] |
rs845028 | 0.80[JPT][hapmap] |
Symbol | Regulation type |
---|---|
ERAP1 | Proximal transcriptional regulation |
ERAP1 | Distal transcriptional regulation |
ERAP1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014