SNP Report

Basic Infomation

Name	rs845028 dbSNP
Location	chr:5,96170222
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12054720	0.86[JPT][hapmap]
rs12659038	0.84[ASN][1000 genomes]
rs149189	0.80[ASN][1000 genomes]
rs151823	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs151940	0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs152280	0.81[CHD][hapmap]
rs152468	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[ASN][1000 genomes]
rs184971	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303138	0.86[JPT][hapmap]
rs2351012	0.98[ASN][1000 genomes]
rs246453	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs249960	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2549805	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs26491	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs26493	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs26495	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs26496	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs26497	0.80[ASN][1000 genomes]
rs26498	0.87[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs26499	0.80[JPT][hapmap]
rs26510	0.87[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap]
rs26654	0.82[CHB][hapmap]
rs27043	1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs27044	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs27045	0.87[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs27432	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs27434	0.86[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap]
rs27529	0.87[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap]
rs27694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27710	0.87[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap]
rs28119	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2927619	0.98[ASN][1000 genomes]
rs30186	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs30187	0.87[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap]
rs30376	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs30378	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs30379	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs30380	0.87[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap]
rs34735	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35134	0.86[YRI][hapmap]
rs39840	0.86[ASN][1000 genomes]
rs39841	0.86[ASN][1000 genomes]
rs3985002	0.98[ASN][1000 genomes]
rs42398	1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs469758	0.91[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap]
rs469783	0.83[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap]
rs61112531	0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ERAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 6)

eQTL related gene	Source
ERAP2	seeQTL
CAST	SCAN
ERAP2	SCAN
CAST	SCAN
ERAP2	SCAN
SPATA9	SCAN