SNP Report
Basic Infomation
| Name | rs3985002 dbSNP |
|---|---|
| Location | chr:5,96184025 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12659038 | 0.84[ASN][1000 genomes] |
| rs151823 | 0.96[ASN][1000 genomes] |
| rs152468 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs184971 | 0.98[ASN][1000 genomes] |
| rs2351012 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs249960 | 0.97[ASN][1000 genomes] |
| rs2549805 | 1.00[ASN][1000 genomes] |
| rs26493 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs27043 | 0.84[ASN][1000 genomes] |
| rs27044 | 0.84[ASN][1000 genomes] |
| rs27432 | 0.83[ASN][1000 genomes] |
| rs27694 | 0.98[ASN][1000 genomes] |
| rs2927619 | 1.00[ASN][1000 genomes] |
| rs30376 | 0.84[ASN][1000 genomes] |
| rs34735 | 0.98[ASN][1000 genomes] |
| rs39840 | 0.84[ASN][1000 genomes] |
| rs39841 | 0.84[ASN][1000 genomes] |
| rs42398 | 0.84[ASN][1000 genomes] |
| rs61112531 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs845028 | 0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LNPEP | Distal transcriptional regulation |
| ENSG00000247121 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014