SNP Report

Basic Infomation

Name	rs2549805 dbSNP
Location	chr:5,96176850
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12659038	0.84[ASN][1000 genomes]
rs151823	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs151940	0.87[CHB][hapmap]
rs152468	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs184971	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs187387	0.90[YRI][hapmap]
rs190298	0.90[YRI][hapmap]
rs2351012	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs246453	0.87[CHB][hapmap]
rs249960	0.97[ASN][1000 genomes]
rs26491	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs26493	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs26495	0.87[CHB][hapmap]
rs26496	0.87[CHB][hapmap]
rs26498	0.87[CHB][hapmap]
rs26510	0.87[CHB][hapmap]
rs26654	0.82[CHB][hapmap]
rs27043	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs27044	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs27045	0.87[CHB][hapmap]
rs27432	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs27434	0.86[CHB][hapmap]
rs27529	0.87[CHB][hapmap]
rs27645	0.90[YRI][hapmap]
rs27694	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs27710	0.87[CHB][hapmap]
rs28119	0.87[CHB][hapmap]
rs2927619	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs30186	0.87[CHB][hapmap]
rs30187	0.87[CHB][hapmap]
rs30376	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs30378	0.91[CHB][hapmap]
rs30379	0.87[CHB][hapmap]
rs30380	0.87[CHB][hapmap]
rs34735	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34755	0.83[YRI][hapmap]
rs39840	0.84[ASN][1000 genomes]
rs39841	0.84[ASN][1000 genomes]
rs3985002	1.00[ASN][1000 genomes]
rs42398	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs469758	0.91[CHB][hapmap]
rs469783	0.83[CHB][hapmap]
rs4869315	0.86[JPT][hapmap]
rs61112531	1.00[ASN][1000 genomes]
rs845028	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ERAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)