SNP Report
Basic Infomation
| Name | rs4869315 dbSNP |
|---|---|
| Location | chr:5,96229272 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10434709 | 0.84[ASW][hapmap];0.96[YRI][hapmap] |
| rs1056893 | 0.86[YRI][hapmap] |
| rs11135482 | 0.84[ASW][hapmap];0.96[YRI][hapmap] |
| rs11135484 | 0.96[YRI][hapmap] |
| rs12054720 | 0.83[CHD][hapmap];0.90[JPT][hapmap] |
| rs1230361 | 0.87[MEX][hapmap] |
| rs12516666 | 0.86[YRI][hapmap] |
| rs13167902 | 0.84[ASW][hapmap];0.96[YRI][hapmap] |
| rs1559355 | 0.96[YRI][hapmap] |
| rs187265 | 0.86[YRI][hapmap] |
| rs2113189 | 0.91[YRI][hapmap] |
| rs2161658 | 0.86[YRI][hapmap] |
| rs2247650 | 0.86[YRI][hapmap] |
| rs2255546 | 0.86[YRI][hapmap] |
| rs2255633 | 0.86[YRI][hapmap] |
| rs2255634 | 0.86[YRI][hapmap] |
| rs2255637 | 0.86[YRI][hapmap] |
| rs2278018 | 0.96[YRI][hapmap] |
| rs2278019 | 0.84[ASW][hapmap];0.96[YRI][hapmap] |
| rs2287988 | 0.86[YRI][hapmap] |
| rs2303138 | 0.81[CHD][hapmap];0.90[JPT][hapmap] |
| rs2548523 | 0.86[YRI][hapmap] |
| rs2548524 | 0.86[YRI][hapmap] |
| rs2548533 | 0.86[YRI][hapmap] |
| rs2548536 | 0.91[YRI][hapmap] |
| rs2548537 | 0.89[YRI][hapmap] |
| rs2548538 | 0.86[YRI][hapmap] |
| rs2548539 | 0.88[YRI][hapmap] |
| rs2548540 | 0.86[YRI][hapmap] |
| rs2549779 | 0.87[MEX][hapmap] |
| rs2549782 | 0.86[YRI][hapmap] |
| rs2549785 | 0.86[YRI][hapmap] |
| rs2549790 | 0.89[YRI][hapmap] |
| rs2549795 | 0.86[YRI][hapmap] |
| rs2549797 | 0.86[YRI][hapmap] |
| rs2549805 | 0.86[JPT][hapmap] |
| rs2617436 | 0.87[MEX][hapmap] |
| rs2910686 | 0.84[YRI][hapmap] |
| rs3734015 | 0.96[YRI][hapmap] |
| rs4869316 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs56285155 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP2 | Proximal transcriptional regulation |
| ERAP2 | Distal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| ENSG00000247121 | RNA binding protein mediated regulation |
| ERAP2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 15)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014