SNP Report
Basic Infomation
| Name | rs12054720 dbSNP |
|---|---|
| Location | chr:5,96289724 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10434710 | 0.81[AMR][1000 genomes] |
| rs151823 | 0.81[JPT][hapmap];0.87[MEX][hapmap] |
| rs152468 | 0.86[JPT][hapmap];0.81[MEX][hapmap] |
| rs184971 | 0.85[JPT][hapmap] |
| rs2303138 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs26493 | 0.81[JPT][hapmap];0.81[MEX][hapmap] |
| rs27043 | 0.81[JPT][hapmap];0.81[MEX][hapmap] |
| rs27044 | 0.81[JPT][hapmap] |
| rs27432 | 0.81[JPT][hapmap] |
| rs27689 | 1.00[CEU][hapmap] |
| rs27694 | 0.85[JPT][hapmap] |
| rs30376 | 0.81[JPT][hapmap] |
| rs34735 | 0.81[JPT][hapmap] |
| rs42398 | 0.81[JPT][hapmap];0.81[MEX][hapmap] |
| rs4869315 | 0.83[CHD][hapmap];0.90[JPT][hapmap] |
| rs4869316 | 0.91[JPT][hapmap] |
| rs845028 | 0.86[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LNPEP | Proximal transcriptional regulation |
| LNPEP | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014