SNP Report

Basic Infomation

Name	rs27694 dbSNP
Location	chr:5,96164109
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12054720	0.85[JPT][hapmap]
rs12659038	0.84[ASN][1000 genomes]
rs149189	0.80[ASN][1000 genomes]
rs151823	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs151940	0.87[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs152468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs184971	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303138	0.85[JPT][hapmap]
rs2351012	0.98[ASN][1000 genomes]
rs246453	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs249960	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2549805	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs26491	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs26493	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs26495	0.87[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs26496	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs26497	0.80[ASN][1000 genomes]
rs26498	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs26510	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs26654	0.82[CHB][hapmap]
rs27043	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs27044	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs27045	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs27432	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs27434	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs27529	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs27710	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs28119	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2927619	0.98[ASN][1000 genomes]
rs30186	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs30187	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs30376	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs30378	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs30379	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs30380	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs34735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35134	0.90[YRI][hapmap]
rs39840	0.86[ASN][1000 genomes]
rs39841	0.86[ASN][1000 genomes]
rs3985002	0.98[ASN][1000 genomes]
rs42398	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs469758	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs469783	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs61112531	0.98[ASN][1000 genomes]
rs845028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ERAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)