SNP Report

Basic Infomation

Name	rs27645 dbSNP
Location	chr:5,96163439
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 60)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs149189	0.82[ASN][1000 genomes]
rs149431	0.85[ASN][1000 genomes]
rs149544	0.85[ASN][1000 genomes]
rs151908	0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs151909	0.85[ASN][1000 genomes]
rs151910	0.85[ASN][1000 genomes]
rs151911	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs151940	0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs151953	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs151954	0.85[ASN][1000 genomes]
rs151964	0.81[ASN][1000 genomes]
rs152280	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs152466	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs190298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs193482	0.85[ASN][1000 genomes]
rs246453	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2549805	0.90[YRI][hapmap]
rs26489	0.81[ASN][1000 genomes]
rs26491	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs26495	0.83[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs26496	0.83[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs26497	0.82[ASN][1000 genomes]
rs26498	0.83[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs26500	0.81[ASN][1000 genomes]
rs26510	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs27045	0.83[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs27434	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs27527	0.96[ASN][1000 genomes]
rs27529	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs27640	0.81[ASN][1000 genomes]
rs27710	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs28119	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs28129	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs28333	0.81[ASN][1000 genomes]
rs28337	0.81[ASN][1000 genomes]
rs30185	0.81[ASN][1000 genomes]
rs30186	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs30187	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs30378	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs30379	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs30380	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs34737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34753	0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs34755	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34756	0.82[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs34757	0.85[ASN][1000 genomes]
rs34759	0.85[ASN][1000 genomes]
rs34760	0.85[ASN][1000 genomes]
rs34762	0.85[ASN][1000 genomes]
rs34764	0.83[ASN][1000 genomes]
rs35134	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs40090	0.80[ASN][1000 genomes]
rs40091	0.84[ASN][1000 genomes]
rs40604	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs41135	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs42443	0.85[ASN][1000 genomes]
rs468130	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs469758	0.86[JPT][hapmap]
rs469783	0.87[CHB][hapmap];0.86[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ERAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)