SNP Report
Basic Infomation
| Name | rs41135 dbSNP |
|---|---|
| Location | chr:5,96166026 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs152466 | 0.84[EUR][1000 genomes] |
| rs187387 | 0.89[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs190298 | 0.89[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs26650 | 0.94[JPT][hapmap] |
| rs27645 | 0.89[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs34737 | 0.84[EUR][1000 genomes] |
| rs34755 | 0.85[CEU][hapmap];0.89[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 16)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014