SNP Report
Name | rs40090   dbSNP |
---|---|
Location | chr:5,96154754 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs149431 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs149482 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs149544 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs151908 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs151909 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs151910 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs151911 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs151953 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs151954 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs152280 | 0.84[ASN][1000 genomes] |
rs152466 | 0.80[ASN][1000 genomes] |
rs187387 | 0.80[ASN][1000 genomes] |
rs190298 | 0.80[ASN][1000 genomes] |
rs193482 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs26653 | 0.83[ASN][1000 genomes] |
rs26654 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs26655 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs27527 | 0.84[ASN][1000 genomes] |
rs27645 | 0.80[ASN][1000 genomes] |
rs28129 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34737 | 0.80[ASN][1000 genomes] |
rs34750 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs34751 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs34752 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs34753 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34755 | 0.92[ASN][1000 genomes] |
rs34756 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34757 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34759 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34760 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34761 | 0.85[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs34762 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34764 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs35134 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs40091 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs40604 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs42443 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs468130 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs695965 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ERAP1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014