SNP Report
Basic Infomation
| Name | rs34752 dbSNP |
|---|---|
| Location | chr:5,96149217 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 66)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs149189 | 0.88[ASN][1000 genomes] |
| rs149431 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs149482 | 0.95[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs149544 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs151908 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs151909 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs151910 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs151911 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs151940 | 0.88[ASN][1000 genomes] |
| rs151953 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs151954 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs151964 | 0.87[ASN][1000 genomes] |
| rs193482 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs246453 | 0.84[ASN][1000 genomes] |
| rs246454 | 0.84[ASN][1000 genomes] |
| rs246455 | 0.84[ASN][1000 genomes] |
| rs26489 | 0.87[ASN][1000 genomes] |
| rs26490 | 0.84[ASN][1000 genomes] |
| rs26491 | 0.87[ASN][1000 genomes] |
| rs26495 | 0.88[ASN][1000 genomes] |
| rs26496 | 0.88[ASN][1000 genomes] |
| rs26497 | 0.88[ASN][1000 genomes] |
| rs26498 | 0.88[ASN][1000 genomes] |
| rs26500 | 0.87[ASN][1000 genomes] |
| rs26510 | 0.87[ASN][1000 genomes] |
| rs26512 | 0.86[ASN][1000 genomes] |
| rs26653 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs26654 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs26655 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs27045 | 0.88[ASN][1000 genomes] |
| rs27434 | 0.87[ASN][1000 genomes] |
| rs27529 | 0.87[ASN][1000 genomes] |
| rs27640 | 0.87[ASN][1000 genomes] |
| rs27710 | 0.87[ASN][1000 genomes] |
| rs28119 | 0.87[ASN][1000 genomes] |
| rs28129 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28333 | 0.87[ASN][1000 genomes] |
| rs28337 | 0.87[ASN][1000 genomes] |
| rs30185 | 0.87[ASN][1000 genomes] |
| rs30186 | 0.87[ASN][1000 genomes] |
| rs30187 | 0.87[ASN][1000 genomes] |
| rs30378 | 0.84[ASN][1000 genomes] |
| rs30379 | 0.84[ASN][1000 genomes] |
| rs30380 | 0.84[ASN][1000 genomes] |
| rs34750 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34751 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34753 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34755 | 0.81[ASN][1000 genomes] |
| rs34756 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34757 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34759 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34760 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34761 | 0.92[EUR][1000 genomes] |
| rs34762 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34764 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35134 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs40090 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs40091 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs40604 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs42443 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs467735 | 0.84[ASN][1000 genomes] |
| rs468130 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs469735 | 0.85[ASN][1000 genomes] |
| rs469758 | 0.84[ASN][1000 genomes] |
| rs469783 | 0.82[ASN][1000 genomes] |
| rs695965 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014