SNP Report
Basic Infomation
| Name | rs27042 dbSNP |
|---|---|
| Location | chr:5,96116940 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs149078 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes] |
| rs149481 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes] |
| rs151928 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs26613 | 0.84[JPT][hapmap] |
| rs26616 | 0.86[JPT][hapmap] |
| rs26617 | 0.86[JPT][hapmap] |
| rs26618 | 0.86[JPT][hapmap] |
| rs26652 | 0.86[JPT][hapmap] |
| rs27619 | 0.84[CEU][hapmap];0.96[YRI][hapmap] |
| rs469736 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs469876 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP1 | Proximal transcriptional regulation |
| ENSG00000248734 | Proximal transcriptional regulation |
| CAST | Distal transcriptional regulation |
| ENSG00000249180 | Distal transcriptional regulation |
| ENSG00000248734 | Distal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| ERAP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014