SNP Report
Basic Infomation
| Name | rs2590289 dbSNP |
|---|---|
| Location | chr:10,60059641 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 54)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509087 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1199094 | 0.80[CEU][hapmap];0.95[TSI][hapmap] |
| rs1199097 | 0.82[JPT][hapmap] |
| rs1582159 | 0.87[EUR][1000 genomes] |
| rs16911916 | 0.90[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs16911920 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs16912053 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16912145 | 0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs16912161 | 0.81[JPT][hapmap] |
| rs16912166 | 0.80[JPT][hapmap] |
| rs1698473 | 0.80[CEU][hapmap] |
| rs1769003 | 0.84[JPT][hapmap] |
| rs1832557 | 0.87[EUR][1000 genomes] |
| rs1890659 | 0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1934334 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1934335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2153283 | 0.82[JPT][hapmap] |
| rs2174021 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2275443 | 0.82[ASN][1000 genomes] |
| rs2306605 | 0.81[JPT][hapmap] |
| rs2486484 | 0.87[EUR][1000 genomes] |
| rs2590288 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2590290 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2590291 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2590292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2590303 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[MKK][hapmap];0.96[ASN][1000 genomes] |
| rs2590317 | 0.95[JPT][hapmap] |
| rs2590332 | 0.87[EUR][1000 genomes] |
| rs2790148 | 0.87[EUR][1000 genomes] |
| rs2790156 | 0.95[JPT][hapmap] |
| rs2790180 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2790183 | 0.87[EUR][1000 genomes] |
| rs2790190 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2790192 | 0.87[EUR][1000 genomes] |
| rs2790195 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2790196 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2790197 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2790233 | 0.80[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs2790234 | 0.80[CEU][hapmap] |
| rs2893772 | 0.89[ASN][1000 genomes] |
| rs2893773 | 0.82[ASN][1000 genomes] |
| rs3956816 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs7069613 | 0.83[JPT][hapmap] |
| rs7070901 | 0.83[ASN][1000 genomes] |
| rs7071333 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs7073090 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes] |
| rs7073539 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7082548 | 0.83[ASN][1000 genomes] |
| rs714113 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72795631 | 0.83[ASN][1000 genomes] |
| rs72795634 | 0.83[ASN][1000 genomes] |
| rs7903198 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes] |
| rs7907565 | 0.83[ASN][1000 genomes] |
| rs965867 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000228527 | Proximal transcriptional regulation |
| TFAM | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014