SNP Report
Basic Infomation
| Name | rs2306605 dbSNP |
|---|---|
| Location | chr:10,60122994 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509087 | 0.81[JPT][hapmap] |
| rs16911920 | 0.81[JPT][hapmap] |
| rs16912053 | 0.81[JPT][hapmap] |
| rs16912145 | 0.90[JPT][hapmap] |
| rs16912161 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs16912166 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16912196 | 0.80[EUR][1000 genomes] |
| rs16912197 | 0.80[EUR][1000 genomes] |
| rs16912201 | 0.80[EUR][1000 genomes] |
| rs16912202 | 0.80[EUR][1000 genomes] |
| rs17847532 | 0.80[EUR][1000 genomes] |
| rs1890659 | 0.81[JPT][hapmap] |
| rs2174021 | 0.81[JPT][hapmap] |
| rs2590289 | 0.81[JPT][hapmap] |
| rs2590303 | 0.85[JPT][hapmap] |
| rs2790190 | 0.81[JPT][hapmap] |
| rs2790196 | 0.81[JPT][hapmap] |
| rs2790197 | 0.80[JPT][hapmap] |
| rs3956816 | 0.81[JPT][hapmap] |
| rs56713413 | 1.00[ASN][1000 genomes] |
| rs7067670 | 0.87[AFR][1000 genomes] |
| rs7069613 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs7071333 | 0.84[JPT][hapmap] |
| rs7073090 | 0.80[JPT][hapmap] |
| rs7073539 | 0.81[JPT][hapmap] |
| rs714113 | 0.81[JPT][hapmap] |
| rs73288305 | 1.00[ASN][1000 genomes] |
| rs73288386 | 0.95[ASN][1000 genomes] |
| rs7903198 | 0.81[JPT][hapmap] |
| rs965867 | 0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| UBE2D1 | Proximal transcriptional regulation |
| UBE2D1 | Distal transcriptional regulation |
| UBE2D1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014