SNP Report

Basic Infomation

Name	rs16911920 dbSNP
Location	chr:10,59942005
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10509087	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11818436	0.84[EUR][1000 genomes]
rs1199097	0.82[JPT][hapmap]
rs16911916	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16912145	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs16912161	0.81[JPT][hapmap]
rs16912166	0.81[JPT][hapmap]
rs1769003	0.85[JPT][hapmap]
rs1890659	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1934334	0.83[ASN][1000 genomes]
rs1934335	0.83[ASN][1000 genomes]
rs2153283	0.83[JPT][hapmap]
rs2174021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275443	0.99[ASN][1000 genomes]
rs2306605	0.81[JPT][hapmap]
rs2590289	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2590290	0.83[ASN][1000 genomes]
rs2590291	0.83[ASN][1000 genomes]
rs2590292	0.83[ASN][1000 genomes]
rs2590303	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2590317	0.95[JPT][hapmap]
rs2590324	0.80[JPT][hapmap]
rs2790156	0.95[JPT][hapmap]
rs2790180	0.85[ASN][1000 genomes]
rs2790190	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2790195	0.83[ASN][1000 genomes]
rs2790196	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2790197	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3956816	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7069613	0.84[JPT][hapmap]
rs7070901	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071333	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7082548	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs714113	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs72795629	0.86[EUR][1000 genomes]
rs72795630	0.87[EUR][1000 genomes]
rs72795631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795633	0.87[EUR][1000 genomes]
rs72795634	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795645	0.84[EUR][1000 genomes]
rs72795650	0.84[EUR][1000 genomes]
rs72795652	0.84[EUR][1000 genomes]
rs72795657	0.84[EUR][1000 genomes]
rs72795664	0.84[EUR][1000 genomes]
rs72795671	0.82[EUR][1000 genomes]
rs72795672	0.82[EUR][1000 genomes]
rs7903198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907565	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IPMK	Distal transcriptional regulation
CISD1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)