SNP Report
Basic Infomation
| Name | rs2275443 dbSNP |
|---|---|
| Location | chr:10,59956041 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509087 | 0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16911916 | 0.99[ASN][1000 genomes] |
| rs16911920 | 0.99[ASN][1000 genomes] |
| rs16912053 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1890659 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1934334 | 0.82[ASN][1000 genomes] |
| rs1934335 | 0.82[ASN][1000 genomes] |
| rs2174021 | 0.99[ASN][1000 genomes] |
| rs2590289 | 0.82[ASN][1000 genomes] |
| rs2590290 | 0.82[ASN][1000 genomes] |
| rs2590291 | 0.82[ASN][1000 genomes] |
| rs2590292 | 0.82[ASN][1000 genomes] |
| rs2590303 | 0.82[ASN][1000 genomes] |
| rs2790180 | 0.84[ASN][1000 genomes] |
| rs2790190 | 0.81[ASN][1000 genomes] |
| rs2790195 | 0.82[ASN][1000 genomes] |
| rs2790196 | 0.82[ASN][1000 genomes] |
| rs3956816 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4568957 | 0.81[AFR][1000 genomes] |
| rs7070901 | 0.99[ASN][1000 genomes] |
| rs7071333 | 0.99[ASN][1000 genomes] |
| rs7073090 | 0.99[ASN][1000 genomes] |
| rs7073539 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7082548 | 0.98[ASN][1000 genomes] |
| rs714113 | 0.82[ASN][1000 genomes] |
| rs72795631 | 0.99[ASN][1000 genomes] |
| rs72795634 | 0.99[ASN][1000 genomes] |
| rs7903198 | 0.99[ASN][1000 genomes] |
| rs7907565 | 0.99[ASN][1000 genomes] |
| rs965867 | 0.82[ASN][1000 genomes] |
| rs9730970 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IPMK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014