SNP Report

Basic Infomation

Name	rs10509087 dbSNP
Location	chr:10,59937660
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1199097	0.82[JPT][hapmap]
rs16911916	0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs16911920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs16912053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16912145	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs16912161	0.81[JPT][hapmap]
rs16912166	0.80[JPT][hapmap]
rs1769003	0.84[JPT][hapmap]
rs1890659	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1934334	0.83[ASN][1000 genomes]
rs1934335	0.83[ASN][1000 genomes]
rs2153283	0.82[JPT][hapmap]
rs2174021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2275443	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306605	0.81[JPT][hapmap]
rs2590289	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2590290	0.83[ASN][1000 genomes]
rs2590291	0.83[ASN][1000 genomes]
rs2590292	0.83[ASN][1000 genomes]
rs2590303	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2590317	0.95[JPT][hapmap]
rs2790156	0.95[JPT][hapmap]
rs2790180	0.84[ASN][1000 genomes]
rs2790190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2790195	0.83[ASN][1000 genomes]
rs2790196	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2790197	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3956816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7069613	0.83[JPT][hapmap]
rs7070901	0.99[ASN][1000 genomes]
rs7071333	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7073090	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7073539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7082548	0.98[ASN][1000 genomes]
rs714113	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs72795631	0.99[ASN][1000 genomes]
rs72795634	0.99[ASN][1000 genomes]
rs7903198	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7907565	0.99[ASN][1000 genomes]
rs965867	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9730970	0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
IPMK	Distal transcriptional regulation
CISD1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)