SNP Report

Basic Infomation

Name	rs16912145 dbSNP
Location	chr:10,60082668
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10509087	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs16911916	0.85[JPT][hapmap]
rs16911920	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs16912053	0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs16912161	0.90[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs16912166	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1890659	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1934334	0.89[ASN][1000 genomes]
rs1934335	0.89[ASN][1000 genomes]
rs2174021	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2306605	0.90[JPT][hapmap]
rs2590289	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2590290	0.89[ASN][1000 genomes]
rs2590291	0.89[ASN][1000 genomes]
rs2590292	0.89[ASN][1000 genomes]
rs2590303	0.86[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2590317	0.85[JPT][hapmap]
rs2790156	0.84[JPT][hapmap]
rs2790180	0.87[ASN][1000 genomes]
rs2790190	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2790195	0.89[ASN][1000 genomes]
rs2790196	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2790197	0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3956816	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4145785	0.83[YRI][hapmap]
rs7069613	0.94[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs7071333	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs7073090	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs7073539	0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs714113	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs7903198	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs965867	0.88[ASW][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
UBE2D1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)