SNP Report
Basic Infomation
| Name | rs1199094 dbSNP |
|---|---|
| Location | chr:10,59952630 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11818436 | 0.88[CEU][hapmap] |
| rs1582159 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs16851 | 1.00[GIH][hapmap] |
| rs16912088 | 0.88[CEU][hapmap] |
| rs1698437 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1698473 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1832557 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2486481 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2486484 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2590289 | 0.80[CEU][hapmap];0.95[TSI][hapmap] |
| rs2590309 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590318 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2590332 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2790148 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2790183 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2790190 | 0.80[CEU][hapmap] |
| rs2790192 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2790196 | 0.80[CEU][hapmap];0.95[TSI][hapmap] |
| rs2790225 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2790232 | 0.82[ASW][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap] |
| rs2790233 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2790234 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2993832 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs58706444 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs714113 | 0.80[CEU][hapmap];0.95[TSI][hapmap] |
| rs9416678 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IPMK | Proximal transcriptional regulation |
| IPMK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014