SNP Report
Basic Infomation
| Name | rs16912088 dbSNP |
|---|---|
| Location | chr:10,60049818 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11818436 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1199094 | 0.88[CEU][hapmap] |
| rs16912110 | 1.00[EUR][1000 genomes] |
| rs1698473 | 0.88[CEU][hapmap] |
| rs2790233 | 0.88[CEU][hapmap] |
| rs2790234 | 0.88[CEU][hapmap] |
| rs7073090 | 0.92[TSI][hapmap] |
| rs72795629 | 0.86[EUR][1000 genomes] |
| rs72795630 | 0.87[EUR][1000 genomes] |
| rs72795633 | 0.87[EUR][1000 genomes] |
| rs72795645 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72795650 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72795652 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72795657 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72795664 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72795671 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72795672 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72795677 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72795695 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72797410 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72797417 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72797419 | 1.00[EUR][1000 genomes] |
| rs7903198 | 0.92[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IPMK | Distal transcriptional regulation |
| CISD1 | Distal transcriptional regulation |
| TFAM | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014