SNP Report

Basic Infomation

Name	rs2790233 dbSNP
Location	chr:10,60014929
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11818436	0.88[CEU][hapmap]
rs1199094	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1582159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16851	1.00[GIH][hapmap]
rs16912088	0.88[CEU][hapmap]
rs1698437	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1698473	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1832557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1934334	0.87[EUR][1000 genomes]
rs1934335	0.87[EUR][1000 genomes]
rs2225987	0.80[AFR][1000 genomes]
rs2486481	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2486484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590288	0.86[EUR][1000 genomes]
rs2590289	0.80[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2590290	0.87[EUR][1000 genomes]
rs2590291	0.87[EUR][1000 genomes]
rs2590292	0.87[EUR][1000 genomes]
rs2590309	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2590318	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2590332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590346	0.83[AFR][1000 genomes]
rs2590347	0.83[AFR][1000 genomes]
rs2590350	0.83[AFR][1000 genomes]
rs2790148	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790180	0.87[EUR][1000 genomes]
rs2790183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790190	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs2790192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790195	0.86[EUR][1000 genomes]
rs2790196	0.80[CEU][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs2790197	0.82[EUR][1000 genomes]
rs2790225	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2790232	1.00[GIH][hapmap]
rs2790234	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993832	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58706444	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs714113	0.80[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs9416678	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
IPMK	Distal transcriptional regulation
IPMK	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)