SNP Report
Basic Infomation
| Name | rs2993832 dbSNP |
|---|---|
| Location | chr:10,60002672 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1199094 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1582159 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1698437 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1698473 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1832557 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2486481 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2486484 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2590309 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2590318 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2590332 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2790148 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2790183 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2790192 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2790225 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2790233 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2790234 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs58706444 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9416678 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238970 | Proximal transcriptional regulation |
| ENSG00000238970 | Distal transcriptional regulation |
| IPMK | Distal transcriptional regulation |
| CISD1 | Distal transcriptional regulation |
| IPMK | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014