SNP Report

Basic Infomation

Name	rs2158407 dbSNP
Location	chr:15,91015807
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1008507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10520689	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs10852132	0.90[EUR][1000 genomes]
rs11073928	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11073929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11629883	0.80[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11631263	1.00[CEU][hapmap]
rs11631269	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs11632722	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11638617	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11639199	0.82[ASN][1000 genomes]
rs11852792	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11853611	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11854320	0.89[CEU][hapmap]
rs12161988	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12441871	0.80[CEU][hapmap]
rs12912909	0.89[CEU][hapmap]
rs12915045	0.80[CEU][hapmap]
rs16944179	0.89[CEU][hapmap]
rs16944473	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16944485	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16944527	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16944545	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16974215	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs28455184	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28534079	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28629981	0.91[EUR][1000 genomes]
rs28630708	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28672102	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28685205	0.93[EUR][1000 genomes]
rs28691618	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28702574	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28782602	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28863184	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4280212	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4441248	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58714003	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62019402	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62020730	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62020738	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62021772	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62021773	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62021775	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6496679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6496680	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs67409214	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7169522	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8027565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8041397	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9944285	0.89[CEU][hapmap];0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
IQGAP1	Proximal transcriptional regulation
IQGAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)