SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1008507	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10520689	0.81[EUR][1000 genomes]
rs10852132	0.80[EUR][1000 genomes]
rs11073928	0.88[EUR][1000 genomes]
rs11073929	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11629883	0.84[EUR][1000 genomes]
rs11631269	0.80[EUR][1000 genomes]
rs16944473	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16944485	0.84[EUR][1000 genomes]
rs16944527	0.82[EUR][1000 genomes]
rs16974215	0.81[EUR][1000 genomes]
rs2158407	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28534079	0.82[EUR][1000 genomes]
rs28629981	0.81[EUR][1000 genomes]
rs28630708	0.86[EUR][1000 genomes]
rs28672102	0.82[EUR][1000 genomes]
rs28685205	0.83[EUR][1000 genomes]
rs28691618	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28702574	0.91[EUR][1000 genomes]
rs28782602	0.94[EUR][1000 genomes]
rs62020730	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62020738	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62021772	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62021773	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62021775	0.87[EUR][1000 genomes]
rs6496679	0.86[EUR][1000 genomes]
rs6496680	0.82[EUR][1000 genomes]
rs7169522	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8027565	0.87[EUR][1000 genomes]
rs8041397	0.82[EUR][1000 genomes]
rs9944285	0.86[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
IQGAP1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)