SNP Report
Basic Infomation
| Name | rs6496680 dbSNP |
|---|---|
| Location | chr:15,91038477 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1008507 | 0.94[ASW][hapmap];0.89[CEU][hapmap];0.84[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs10520689 | 0.94[ASW][hapmap];0.84[GIH][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap] |
| rs10852132 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11073928 | 0.81[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11073929 | 0.89[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs11629883 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11631263 | 0.88[CEU][hapmap] |
| rs11631269 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11852792 | 0.82[EUR][1000 genomes] |
| rs12161988 | 0.88[ASW][hapmap];0.82[EUR][1000 genomes] |
| rs12441871 | 0.90[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs16944473 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs16944485 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16944527 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16974215 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2158407 | 0.89[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs28534079 | 1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28629981 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28630708 | 0.91[EUR][1000 genomes] |
| rs28672102 | 1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs28685205 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28691618 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs28702574 | 0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28782602 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs28863184 | 0.82[EUR][1000 genomes] |
| rs3743412 | 0.85[CHB][hapmap] |
| rs4280212 | 0.82[EUR][1000 genomes] |
| rs4441248 | 0.82[EUR][1000 genomes] |
| rs58714003 | 0.82[EUR][1000 genomes] |
| rs62020738 | 0.87[EUR][1000 genomes] |
| rs62021772 | 0.91[EUR][1000 genomes] |
| rs62021773 | 0.90[EUR][1000 genomes] |
| rs62021775 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6496679 | 0.94[ASW][hapmap];0.89[CEU][hapmap];0.84[GIH][hapmap];0.81[MEX][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7169522 | 0.92[EUR][1000 genomes] |
| rs8027565 | 0.89[CEU][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs8041397 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9944285 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IQGAP1 | Proximal transcriptional regulation |
| IQGAP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014