SNP Report
Name | rs3743412   dbSNP |
---|---|
Location | chr:15,91045261 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11629883 | 0.85[CHB][hapmap] |
rs11631269 | 0.85[CHB][hapmap] |
rs12437506 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs12437529 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap] |
rs12438468 | 1.00[CEU][hapmap] |
rs12438963 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes] |
rs12439535 | 0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12439604 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap] |
rs12439754 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12439797 | 1.00[CEU][hapmap] |
rs12440050 | 1.00[CEU][hapmap] |
rs12440233 | 1.00[CEU][hapmap] |
rs12440296 | 1.00[CEU][hapmap] |
rs12440307 | 0.83[EUR][1000 genomes] |
rs12441335 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12441630 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap] |
rs12441772 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12442600 | 0.83[EUR][1000 genomes] |
rs12442739 | 1.00[EUR][1000 genomes] |
rs12442767 | 1.00[CEU][hapmap] |
rs12442943 | 1.00[CEU][hapmap] |
rs16944263 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs16944267 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs16944270 | 1.00[CEU][hapmap] |
rs16944283 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap] |
rs2238326 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2283440 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2283446 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2286288 | 1.00[CEU][hapmap] |
rs2301830 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2301831 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6496680 | 0.85[CHB][hapmap] |
rs7178665 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73485123 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs73485128 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs8032987 | 1.00[CEU][hapmap];0.82[JPT][hapmap] |
rs8041397 | 0.83[CHB][hapmap] |
Symbol | Regulation type |
---|---|
IQGAP1 | Proximal transcriptional regulation |
CRTC3 | Distal transcriptional regulation |
IQGAP1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014