SNP Report

Basic Infomation

Name	rs2238326 dbSNP
Location	chr:15,91012161
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12437506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12437529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12438963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12439535	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12439604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12439754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439797	1.00[CEU][hapmap]
rs12440050	1.00[CEU][hapmap]
rs12440233	1.00[CEU][hapmap]
rs12440296	1.00[CEU][hapmap]
rs12440307	0.83[EUR][1000 genomes]
rs12441335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12441630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12441772	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12442600	0.83[EUR][1000 genomes]
rs12442739	1.00[EUR][1000 genomes]
rs12442767	1.00[CEU][hapmap]
rs12442943	1.00[CEU][hapmap]
rs16944263	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16944267	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16944270	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs16944283	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16944485	0.84[CHB][hapmap]
rs16944527	0.85[CHB][hapmap]
rs16974215	0.84[CHB][hapmap]
rs2283440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2283446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286288	1.00[CEU][hapmap]
rs2301830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2301831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3743412	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7178665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73485128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032987	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs8041397	0.83[CHB][hapmap]
rs9944285	0.85[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
IQGAP1	Proximal transcriptional regulation
IQGAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)