SNP Report
Basic Infomation
| Name | rs12442600 dbSNP |
|---|---|
| Location | chr:15,91088662 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12438963 | 0.83[EUR][1000 genomes] |
| rs12439535 | 0.83[EUR][1000 genomes] |
| rs12439754 | 0.83[EUR][1000 genomes] |
| rs12440307 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12440311 | 1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12441335 | 0.83[EUR][1000 genomes] |
| rs12441772 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12442488 | 1.00[AMR][1000 genomes] |
| rs12442739 | 0.83[EUR][1000 genomes] |
| rs2238326 | 0.83[EUR][1000 genomes] |
| rs2283440 | 0.83[EUR][1000 genomes] |
| rs2283446 | 0.83[EUR][1000 genomes] |
| rs2301604 | 1.00[AMR][1000 genomes] |
| rs2301830 | 0.83[EUR][1000 genomes] |
| rs2301831 | 0.83[EUR][1000 genomes] |
| rs3743412 | 0.83[EUR][1000 genomes] |
| rs7178665 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73485123 | 0.83[EUR][1000 genomes] |
| rs73485128 | 0.83[EUR][1000 genomes] |
| rs8032275 | 1.00[AMR][1000 genomes] |
| rs8037560 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014