SNP Report

Basic Infomation

Name	rs9944285 dbSNP
Location	chr:15,91028456
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1008507	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs10852132	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11073928	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11073929	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs11629883	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11631263	0.88[CEU][hapmap]
rs11631269	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437506	0.84[CHB][hapmap]
rs12437529	0.84[CHB][hapmap]
rs12438963	0.83[CHB][hapmap]
rs12439535	0.85[CHB][hapmap]
rs12439604	0.85[CHB][hapmap]
rs12439754	0.85[CHB][hapmap]
rs12441335	0.84[CHB][hapmap]
rs12441630	0.85[CHB][hapmap]
rs12441871	0.90[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs16944473	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16944485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16944527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16974215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2158407	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs2238326	0.85[CHB][hapmap]
rs2283440	0.85[CHB][hapmap]
rs2283446	0.84[CHB][hapmap]
rs2301830	0.84[CHB][hapmap]
rs2301831	0.84[CHB][hapmap]
rs28534079	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28629981	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28630708	0.89[EUR][1000 genomes]
rs28672102	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28685205	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28691618	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28702574	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28782602	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28863184	0.86[EUR][1000 genomes]
rs62020738	0.86[EUR][1000 genomes]
rs62021772	0.89[EUR][1000 genomes]
rs62021773	0.90[EUR][1000 genomes]
rs62021775	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6496679	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6496680	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7169522	0.90[EUR][1000 genomes]
rs8027565	0.89[CEU][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs8041397	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IQGAP1	Proximal transcriptional regulation
IQGAP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)