SNP Report
Basic Infomation
| Name | rs12441871 dbSNP |
|---|---|
| Location | chr:15,90925672 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1008507 | 0.80[CEU][hapmap] |
| rs11073929 | 0.80[CEU][hapmap] |
| rs11629883 | 0.81[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap] |
| rs11631263 | 0.88[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs11631269 | 0.90[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap] |
| rs11852549 | 0.83[ASN][1000 genomes] |
| rs11854320 | 0.90[CEU][hapmap] |
| rs12905843 | 0.88[EUR][1000 genomes] |
| rs12906346 | 0.94[EUR][1000 genomes] |
| rs12912856 | 0.82[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12912909 | 0.90[CEU][hapmap] |
| rs12915045 | 0.81[CEU][hapmap] |
| rs16944179 | 0.90[CEU][hapmap] |
| rs16944362 | 0.83[ASN][1000 genomes] |
| rs16944485 | 0.90[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap] |
| rs16944527 | 0.90[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap] |
| rs16974215 | 0.90[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap] |
| rs2158407 | 0.80[CEU][hapmap] |
| rs28667854 | 0.81[ASN][1000 genomes] |
| rs6496679 | 0.80[CEU][hapmap] |
| rs6496680 | 0.90[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs8027565 | 0.80[CEU][hapmap] |
| rs8041397 | 0.85[CEU][hapmap];0.90[CHB][hapmap] |
| rs9944285 | 0.90[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NDUFA3P4 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014