SNP Report
Basic Infomation
| Name | rs12915045 dbSNP |
|---|---|
| Location | chr:15,90876371 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1008507 | 0.80[CEU][hapmap] |
| rs11073929 | 0.80[CEU][hapmap] |
| rs11631263 | 0.88[CEU][hapmap] |
| rs11633730 | 0.93[EUR][1000 genomes] |
| rs11638431 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11854320 | 0.90[CEU][hapmap] |
| rs12441871 | 0.81[CEU][hapmap] |
| rs12912909 | 0.90[CEU][hapmap] |
| rs1562976 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16944179 | 0.90[CEU][hapmap];0.87[TSI][hapmap] |
| rs1975689 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2158407 | 0.80[CEU][hapmap] |
| rs3943505 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6496679 | 0.80[CEU][hapmap] |
| rs7170906 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8027565 | 0.80[CEU][hapmap] |
| rs8040392 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IQGAP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014