SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1008507	0.89[CEU][hapmap];0.91[CHD][hapmap]
rs10520689	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs11073929	0.89[CEU][hapmap];0.91[CHD][hapmap]
rs11631263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11853611	0.83[ASW][hapmap]
rs12161988	0.91[CHD][hapmap]
rs12441871	0.90[CEU][hapmap]
rs12905843	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12906346	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12912856	1.00[ASN][1000 genomes]
rs12912909	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12915045	0.90[CEU][hapmap]
rs16944179	1.00[CEU][hapmap]
rs16944545	0.83[ASW][hapmap]
rs2158407	0.89[CEU][hapmap]
rs36098687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6496679	0.89[CEU][hapmap];0.91[CHD][hapmap]
rs8027565	0.89[CEU][hapmap]
rs8041397	0.85[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
ZNF774	Distal transcriptional regulation
ZNF774	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)